@inproceedings{b3536f79c1cc4ccf9c79da0e2ee44d67,
title = "IQuant: A fast yet accurate GUI tool for transcript quantification",
abstract = "Transcript quantification using RNA-seq is central to contemporary and future transcriptomics research. The existing tools are useful but have much room for improvement. We present a new statistical model, a fast yet accurate transcript quantification algorithm. Our tool takes RNA-seq reads in fasta or fastq format as input and output transcript abundance through a few mouse clicks. Our method compares favorably with the existing GUI tools in terms of both time complexity and accuracy. Availability: Both simulation data used for method comparisons and the GUI tool are freely available at http://asammate. sourceforge.net/.",
keywords = "GUI, RNA-seq, Transcriptome quantification, alternative splicing, constrained least square",
author = "Nguyen, \{Tin Chi\} and Nan Deng and Guorong Xu and Zhansheng Duan and Dongxiao Zhu",
year = "2011",
doi = "10.1109/BIBMW.2011.6112556",
language = "英语",
isbn = "9781457716133",
series = "2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011",
pages = "1048--1050",
booktitle = "2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011",
note = "2011 IEEE International Conference onBioinformatics and Biomedicine Workshops, BIBMW 2011 ; Conference date: 12-11-2011 Through 15-11-2011",
}