TY - JOUR
T1 - Chromosome-scale genome assembly of fusarium oxysporum strain Fo47, a fungal endophyte and biocontrol agent
AU - Wang, Bo
AU - Yu, Houlin
AU - Jia, Yanyan
AU - Dong, Quanbin
AU - Steinberg, Christian
AU - Alabouvette, Claude
AU - Edel-Hermann, Veronique
AU - Corby Kistler, H.
AU - Ye, Kai
AU - Ma, Li Jun
AU - Guo, Li
N1 - Publisher Copyright:
© 2020 The American Phytopathological Society
PY - 2020/9
Y1 - 2020/9
N2 - Here, we report a chromosome-level genome assembly of Fusarium oxysporum Fo47 (12 pseudomolecules; contig N50: 4.52 Mb), generated using a combination of PacBio long-read, Illumina paired end, and high-throughput chromosome conformation capture sequencing data. Although F. oxysporum causes vascular wilt to over 100 plant species, the strain Fo47 is classified as an endophyte and is widely used as a biocontrol agent for plant disease control. The Fo47 genome carries a single accessory chromosome of 4.23 Mb, compared with the reference genome of F. oxysporum f. sp. lycopersici Fol4287. The high-quality assembly and annotation of the Fo47 genome will be a valuable resource for studying the mechanisms underlying the endophytic interactions between F. oxysporum and plants as well as for deciphering the genome evolution of the F. oxysporum species complex.
AB - Here, we report a chromosome-level genome assembly of Fusarium oxysporum Fo47 (12 pseudomolecules; contig N50: 4.52 Mb), generated using a combination of PacBio long-read, Illumina paired end, and high-throughput chromosome conformation capture sequencing data. Although F. oxysporum causes vascular wilt to over 100 plant species, the strain Fo47 is classified as an endophyte and is widely used as a biocontrol agent for plant disease control. The Fo47 genome carries a single accessory chromosome of 4.23 Mb, compared with the reference genome of F. oxysporum f. sp. lycopersici Fol4287. The high-quality assembly and annotation of the Fo47 genome will be a valuable resource for studying the mechanisms underlying the endophytic interactions between F. oxysporum and plants as well as for deciphering the genome evolution of the F. oxysporum species complex.
KW - Biocontrol
KW - Fungal endophyte
KW - Fusarium oxysporum
KW - Genome assembly
KW - Plant-fungal interactions
KW - We thank the anonymous reviewers for their kind and helpful comments on the original manuscript
UR - https://www.scopus.com/pages/publications/85090079957
U2 - 10.1094/MPMI-05-20-0116-A
DO - 10.1094/MPMI-05-20-0116-A
M3 - 文章
C2 - 32552518
AN - SCOPUS:85090079957
SN - 0894-0282
VL - 33
SP - 1108
EP - 1111
JO - Molecular Plant-Microbe Interactions
JF - Molecular Plant-Microbe Interactions
IS - 9
ER -