The YH database: The first Asian diploid genome database

Guoqing Li; Lijia Ma; Chao Song; Zhentao Yang; Xiulan Wang; Hui Huang; Yingrui Li; Ruiqiang Li; Xiuqing Zhang; Huanming Yang; Jian Wang; Jun Wang

doi:10.1093/nar/gkn966

The YH database: The first Asian diploid genome database

Guoqing Li
, Lijia Ma
, Chao Song
, Zhentao Yang
, Xiulan Wang
, Hui Huang
, Yingrui Li
, Ruiqiang Li
, Xiuqing Zhang
, Huanming Yang
, Jian Wang
, Jun Wang

Research output: Contribution to journal › Article › peer-review

35 Scopus citations

Abstract

The YH database is a server that allows the user to easily browse and download data from the first Asian diploid genome. The aim of this platform is to facilitate the study of this Asian genome and to enable improved organization and presentation large-scale personal genome data. Powered by GBrowse, we illustrate here the genome sequences, SNPs, and sequencing reads in the MapView. The relationships between phenotype and genotype can be searched by location, dbSNP ID, HGMD ID, gene symbol and disease name. A BLAST web service is also provided for the purpose of aligning query sequence against YH genome consensus. The YH database is currently one of the three personal genome database, organizing the original data and analysis results in a user-friendly interface, which is an endeavor to achieve fundamental goals for establishing personal medicine. The database is available at http://yh.genomics.org.

Original language	English
Pages (from-to)	D1025-D1028
Journal	Nucleic Acids Research
Volume	37
Issue number	SUPPL. 1
DOIs	https://doi.org/10.1093/nar/gkn966
State	Published - 2009
Externally published	Yes

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10.1093/nar/gkn966

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title = "The YH database: The first Asian diploid genome database",

abstract = "The YH database is a server that allows the user to easily browse and download data from the first Asian diploid genome. The aim of this platform is to facilitate the study of this Asian genome and to enable improved organization and presentation large-scale personal genome data. Powered by GBrowse, we illustrate here the genome sequences, SNPs, and sequencing reads in the MapView. The relationships between phenotype and genotype can be searched by location, dbSNP ID, HGMD ID, gene symbol and disease name. A BLAST web service is also provided for the purpose of aligning query sequence against YH genome consensus. The YH database is currently one of the three personal genome database, organizing the original data and analysis results in a user-friendly interface, which is an endeavor to achieve fundamental goals for establishing personal medicine. The database is available at http://yh.genomics.org.",

author = "Guoqing Li and Lijia Ma and Chao Song and Zhentao Yang and Xiulan Wang and Hui Huang and Yingrui Li and Ruiqiang Li and Xiuqing Zhang and Huanming Yang and Jian Wang and Jun Wang",

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doi = "10.1093/nar/gkn966",

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AU - Li, Guoqing

AU - Ma, Lijia

AU - Song, Chao

AU - Yang, Zhentao

AU - Wang, Xiulan

AU - Huang, Hui

AU - Li, Yingrui

AU - Li, Ruiqiang

AU - Zhang, Xiuqing

AU - Yang, Huanming

AU - Wang, Jian

AU - Wang, Jun

PY - 2009

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AB - The YH database is a server that allows the user to easily browse and download data from the first Asian diploid genome. The aim of this platform is to facilitate the study of this Asian genome and to enable improved organization and presentation large-scale personal genome data. Powered by GBrowse, we illustrate here the genome sequences, SNPs, and sequencing reads in the MapView. The relationships between phenotype and genotype can be searched by location, dbSNP ID, HGMD ID, gene symbol and disease name. A BLAST web service is also provided for the purpose of aligning query sequence against YH genome consensus. The YH database is currently one of the three personal genome database, organizing the original data and analysis results in a user-friendly interface, which is an endeavor to achieve fundamental goals for establishing personal medicine. The database is available at http://yh.genomics.org.

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The YH database: The first Asian diploid genome database

Abstract

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