The complete chloroplast genome of Kolkwitzia amabilis (Caprifoliaceae), an endangered horticultural plant in China

Guo Qing Bai; Tao Zhou; Ji Xiang Zhao; Wei Min Li; Gui Jun Han; Si Feng Li

doi:10.3109/19401736.2015.1118087

The complete chloroplast genome of Kolkwitzia amabilis (Caprifoliaceae), an endangered horticultural plant in China

Guo Qing Bai
, Tao Zhou
, Ji Xiang Zhao
, Wei Min Li
, Gui Jun Han
, Si Feng Li

Research output: Contribution to journal › Article › peer-review

9 Scopus citations

Abstract

The complete chloroplast genome of Kolkwitzia amabilis (Caprifoliaceae) is first presented in the current study. The cp genome of K. amabilis was 156 875 bp in length and composed of two short inverted repeat (IRa and IRb) regions of 23 946 bp which were separated by a small single copy (SSC) region of 18 846 bp and a large single copy (LSC) region of 90 137 bp. The genome encoded 130 genes contained 81 coding genes, 39 tRNA genes, and 8 rRNA genes. The overall AT content of K. amabilis is 61.6% and the corresponding values of the SSC, LSC and IR regions are 66.8%, 64.1%, and 57.3%, respectively. The phylogenetic analysis based on the maximum parsimony tree revealed that K. amabilis was closely related to Lonicera japonica.

Original language	English
Pages (from-to)	296-297
Number of pages	2
Journal	Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis
Volume	28
Issue number	2
DOIs	https://doi.org/10.3109/19401736.2015.1118087
State	Published - 4 Mar 2017
Externally published	Yes

Keywords

Complete chloroplast genome
Kolkwitzia amabilis
high-throughput sequencing (HTS)

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10.3109/19401736.2015.1118087

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@article{abb596df04f84bcd91221e2295da21e5,

title = "The complete chloroplast genome of Kolkwitzia amabilis (Caprifoliaceae), an endangered horticultural plant in China",

abstract = "The complete chloroplast genome of Kolkwitzia amabilis (Caprifoliaceae) is first presented in the current study. The cp genome of K. amabilis was 156 875 bp in length and composed of two short inverted repeat (IRa and IRb) regions of 23 946 bp which were separated by a small single copy (SSC) region of 18 846 bp and a large single copy (LSC) region of 90 137 bp. The genome encoded 130 genes contained 81 coding genes, 39 tRNA genes, and 8 rRNA genes. The overall AT content of K. amabilis is 61.6\% and the corresponding values of the SSC, LSC and IR regions are 66.8\%, 64.1\%, and 57.3\%, respectively. The phylogenetic analysis based on the maximum parsimony tree revealed that K. amabilis was closely related to Lonicera japonica.",

keywords = "Complete chloroplast genome, Kolkwitzia amabilis, high-throughput sequencing (HTS)",

author = "Bai, \{Guo Qing\} and Tao Zhou and Zhao, \{Ji Xiang\} and Li, \{Wei Min\} and Han, \{Gui Jun\} and Li, \{Si Feng\}",

note = "Publisher Copyright: {\textcopyright} 2015 Informa UK Limited, trading as Taylor \& Francis Group.",

year = "2017",

month = mar,

day = "4",

doi = "10.3109/19401736.2015.1118087",

language = "英语",

volume = "28",

pages = "296--297",

journal = "Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis",

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TY - JOUR

T1 - The complete chloroplast genome of Kolkwitzia amabilis (Caprifoliaceae), an endangered horticultural plant in China

AU - Bai, Guo Qing

AU - Zhou, Tao

AU - Zhao, Ji Xiang

AU - Li, Wei Min

AU - Han, Gui Jun

AU - Li, Si Feng

PY - 2017/3/4

Y1 - 2017/3/4

N2 - The complete chloroplast genome of Kolkwitzia amabilis (Caprifoliaceae) is first presented in the current study. The cp genome of K. amabilis was 156 875 bp in length and composed of two short inverted repeat (IRa and IRb) regions of 23 946 bp which were separated by a small single copy (SSC) region of 18 846 bp and a large single copy (LSC) region of 90 137 bp. The genome encoded 130 genes contained 81 coding genes, 39 tRNA genes, and 8 rRNA genes. The overall AT content of K. amabilis is 61.6% and the corresponding values of the SSC, LSC and IR regions are 66.8%, 64.1%, and 57.3%, respectively. The phylogenetic analysis based on the maximum parsimony tree revealed that K. amabilis was closely related to Lonicera japonica.

AB - The complete chloroplast genome of Kolkwitzia amabilis (Caprifoliaceae) is first presented in the current study. The cp genome of K. amabilis was 156 875 bp in length and composed of two short inverted repeat (IRa and IRb) regions of 23 946 bp which were separated by a small single copy (SSC) region of 18 846 bp and a large single copy (LSC) region of 90 137 bp. The genome encoded 130 genes contained 81 coding genes, 39 tRNA genes, and 8 rRNA genes. The overall AT content of K. amabilis is 61.6% and the corresponding values of the SSC, LSC and IR regions are 66.8%, 64.1%, and 57.3%, respectively. The phylogenetic analysis based on the maximum parsimony tree revealed that K. amabilis was closely related to Lonicera japonica.

KW - Complete chloroplast genome

KW - Kolkwitzia amabilis

KW - high-throughput sequencing (HTS)

UR - https://www.scopus.com/pages/publications/85011684812

U2 - 10.3109/19401736.2015.1118087

DO - 10.3109/19401736.2015.1118087

M3 - 文章

C2 - 26731283

AN - SCOPUS:85011684812

SN - 2470-1394

VL - 28

SP - 296

EP - 297

JO - Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis

JF - Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis

IS - 2

ER -

The complete chloroplast genome of Kolkwitzia amabilis (Caprifoliaceae), an endangered horticultural plant in China

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Keywords

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