The complete chloroplast genome of Dipteronia sinensis (Aceraceae), an endangered endemic species to China

Tao Zhou; Ji Xiang Zhao; Yan Ci Yang; Guo Qing Bai; Chen Chen; Gui Fang Zhao

doi:10.3109/19401736.2015.1111352

The complete chloroplast genome of Dipteronia sinensis (Aceraceae), an endangered endemic species to China

Tao Zhou
, Ji Xiang Zhao
, Yan Ci Yang
, Guo Qing Bai
, Chen Chen
, Gui Fang Zhao

Research output: Contribution to journal › Article › peer-review

4 Scopus citations

Abstract

The complete chloroplast sequence of D. sinensis was reported in this study. The total length was 157 080 bp containing a pair of 26 766 bp inverted repeat regions (IRa and IRb), which were separated by a small single copy regions and a large single copy regions (SSC and LSC) of 18 093 and 85 455 bp, respectively. A total of 138 functional genes were annotated, which included 90 protein-coding genes, 40 tRNAs, and eight rRNA genes. The overall GC content of the complete chloroplast genome is 37.8% and in LSC, SSC and IR regions were 35.9%, 32.1%, and 42.7%, respectively. The maximum likelihood (ML) phylogenetic analysis revealed that D. sinensis was closely related to A. buergerianum subsp. Ningpoense in Sapindales order.

Original language	English
Pages (from-to)	123-124
Number of pages	2
Journal	Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis
Volume	28
Issue number	1
DOIs	https://doi.org/10.3109/19401736.2015.1111352
State	Published - 2 Jan 2017
Externally published	Yes

Keywords

Chloroplast genome
Dipteronia sinensis
next-generation sequencing

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10.3109/19401736.2015.1111352

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title = "The complete chloroplast genome of Dipteronia sinensis (Aceraceae), an endangered endemic species to China",

abstract = "The complete chloroplast sequence of D. sinensis was reported in this study. The total length was 157 080 bp containing a pair of 26 766 bp inverted repeat regions (IRa and IRb), which were separated by a small single copy regions and a large single copy regions (SSC and LSC) of 18 093 and 85 455 bp, respectively. A total of 138 functional genes were annotated, which included 90 protein-coding genes, 40 tRNAs, and eight rRNA genes. The overall GC content of the complete chloroplast genome is 37.8\% and in LSC, SSC and IR regions were 35.9\%, 32.1\%, and 42.7\%, respectively. The maximum likelihood (ML) phylogenetic analysis revealed that D. sinensis was closely related to A. buergerianum subsp. Ningpoense in Sapindales order.",

keywords = "Chloroplast genome, Dipteronia sinensis, next-generation sequencing",

author = "Tao Zhou and Zhao, \{Ji Xiang\} and Yang, \{Yan Ci\} and Bai, \{Guo Qing\} and Chen Chen and Zhao, \{Gui Fang\}",

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year = "2017",

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day = "2",

doi = "10.3109/19401736.2015.1111352",

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T1 - The complete chloroplast genome of Dipteronia sinensis (Aceraceae), an endangered endemic species to China

AU - Zhou, Tao

AU - Zhao, Ji Xiang

AU - Yang, Yan Ci

AU - Bai, Guo Qing

AU - Chen, Chen

AU - Zhao, Gui Fang

PY - 2017/1/2

Y1 - 2017/1/2

N2 - The complete chloroplast sequence of D. sinensis was reported in this study. The total length was 157 080 bp containing a pair of 26 766 bp inverted repeat regions (IRa and IRb), which were separated by a small single copy regions and a large single copy regions (SSC and LSC) of 18 093 and 85 455 bp, respectively. A total of 138 functional genes were annotated, which included 90 protein-coding genes, 40 tRNAs, and eight rRNA genes. The overall GC content of the complete chloroplast genome is 37.8% and in LSC, SSC and IR regions were 35.9%, 32.1%, and 42.7%, respectively. The maximum likelihood (ML) phylogenetic analysis revealed that D. sinensis was closely related to A. buergerianum subsp. Ningpoense in Sapindales order.

AB - The complete chloroplast sequence of D. sinensis was reported in this study. The total length was 157 080 bp containing a pair of 26 766 bp inverted repeat regions (IRa and IRb), which were separated by a small single copy regions and a large single copy regions (SSC and LSC) of 18 093 and 85 455 bp, respectively. A total of 138 functional genes were annotated, which included 90 protein-coding genes, 40 tRNAs, and eight rRNA genes. The overall GC content of the complete chloroplast genome is 37.8% and in LSC, SSC and IR regions were 35.9%, 32.1%, and 42.7%, respectively. The maximum likelihood (ML) phylogenetic analysis revealed that D. sinensis was closely related to A. buergerianum subsp. Ningpoense in Sapindales order.

KW - Chloroplast genome

KW - Dipteronia sinensis

KW - next-generation sequencing

UR - https://www.scopus.com/pages/publications/85011715777

U2 - 10.3109/19401736.2015.1111352

DO - 10.3109/19401736.2015.1111352

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AN - SCOPUS:85011715777

SN - 2470-1394

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SP - 123

EP - 124

JO - Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis

JF - Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis

IS - 1

ER -

The complete chloroplast genome of Dipteronia sinensis (Aceraceae), an endangered endemic species to China

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Keywords

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