TY - JOUR
T1 - SilkDB
T2 - A knowledgebase for silkworm biology and genomics
AU - Wang, Jing
AU - Xia, Qingyou
AU - He, Ximiao
AU - Dai, Mingtao
AU - Ruan, Jue
AU - Chen, Jie
AU - Yu, Guo
AU - Yuan, Haifeng
AU - Hu, Yafeng
AU - Li, Ruiqiang
AU - Feng, Tao
AU - Ye, Chen
AU - Lu, Cheng
AU - Wang, Jun
AU - Li, Songgang
AU - Wong, Gane Ka Shu
AU - Yang, Huanming
AU - Wang, Jian
AU - Xiang, Zhonghuai
AU - Zhou, Zeyang
AU - Yu, Jun
PY - 2005/1/1
Y1 - 2005/1/1
N2 - The Silkworm Knowledgebase (SilkDB) is a web-based repository for the curation, integration and study of silkworm genetic and genomic data. With the recent accomplishment of a ∼6X draft genome sequence of the domestic silkworm (Bombyx mori), SilkDB provides an integrated representation of the large-scale, genome-wide sequence assembly, cDNAs, clusters of expressed sequence tags (ESTs), transposable elements (TEs), mutants, single nucleotide polymorphisms (SNPs) and functional annotations of genes with assignments to InterPro domains and Gene Ontology (GO) terms. SilkDB also hosts a set of ESTs from Bombyx mandarina, a wild progenitor of B.mori, and a collection of genes from other Lepidoptera. Comparative analysis results between the domestic and wild silkworm, between B.mori and other Lepidoptera, and between B.mori and the two sequenced insects, fruitfly and mosquito, are displayed by using B.mori genome sequence as a reference framework. Designed as a basic platform, SilkDB strives to provide a comprehensive knowledgebase about the silkworm and present the silk-worm genome and related information in systematic and graphical ways for the convenience of in-depth comparative studies. SilkDB is publicly accessible at http://silkworm.genomics.org.cn.
AB - The Silkworm Knowledgebase (SilkDB) is a web-based repository for the curation, integration and study of silkworm genetic and genomic data. With the recent accomplishment of a ∼6X draft genome sequence of the domestic silkworm (Bombyx mori), SilkDB provides an integrated representation of the large-scale, genome-wide sequence assembly, cDNAs, clusters of expressed sequence tags (ESTs), transposable elements (TEs), mutants, single nucleotide polymorphisms (SNPs) and functional annotations of genes with assignments to InterPro domains and Gene Ontology (GO) terms. SilkDB also hosts a set of ESTs from Bombyx mandarina, a wild progenitor of B.mori, and a collection of genes from other Lepidoptera. Comparative analysis results between the domestic and wild silkworm, between B.mori and other Lepidoptera, and between B.mori and the two sequenced insects, fruitfly and mosquito, are displayed by using B.mori genome sequence as a reference framework. Designed as a basic platform, SilkDB strives to provide a comprehensive knowledgebase about the silkworm and present the silk-worm genome and related information in systematic and graphical ways for the convenience of in-depth comparative studies. SilkDB is publicly accessible at http://silkworm.genomics.org.cn.
UR - https://www.scopus.com/pages/publications/13444309574
U2 - 10.1093/nar/gki116
DO - 10.1093/nar/gki116
M3 - 文章
C2 - 15608225
AN - SCOPUS:13444309574
SN - 0305-1048
VL - 33
SP - D399-D402
JO - Nucleic Acids Research
JF - Nucleic Acids Research
IS - DATABASE ISS.
ER -