Characterization of the complete plastid genome of Quercus tarokoensis

Yanci Yang; Tao Zhou; Juan Zhu; Jianhua Zhao; Guifang Zhao

doi:10.1007/s12686-017-0796-z

Characterization of the complete plastid genome of Quercus tarokoensis

Yanci Yang
, Tao Zhou
, Juan Zhu
, Jianhua Zhao
, Guifang Zhao

Research output: Contribution to journal › Article › peer-review

6 Scopus citations

Abstract

Quercus tarokoensis is an endemic species to Taiwan, China. The complete plastid genome of Q. tarokoensis was assembled from Illumina pair-end sequence reads. The whole plastome was 161,355 bp in length and presented a quadripartite structure consisting of two copies of inverted repeat (IR) regions (25,860) separated by a large single copy region (90,602 bp) and a small single copy region (19,033 bp). The plastome of Q. tarokoensis encoded a total of 134 genes, including 86 protein-coding genes (79 PCG species), 40 tRNA genes (33 tRNA species), and 8 rRNA genes (4 rRNA species). The overall GC content of Q. tarokoensis plastome is 36.8%. A maximum likelihood phylogenetic analysis based on 33 complete plastomes revealed that Q. tarokoensis was collectively sister to a clade of (Quercus variabilis, (Quercus dolicholepis, Quercus baronii)) with high support.

Original language	English
Pages (from-to)	191-193
Number of pages	3
Journal	Conservation Genetics Resources
Volume	10
Issue number	2
DOIs	https://doi.org/10.1007/s12686-017-0796-z
State	Published - 1 Jun 2018
Externally published	Yes

Keywords

Endemic species
Phylogenetic relationship
Plastid genome
Quercus tarokoensis

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10.1007/s12686-017-0796-z

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title = "Characterization of the complete plastid genome of Quercus tarokoensis",

abstract = "Quercus tarokoensis is an endemic species to Taiwan, China. The complete plastid genome of Q. tarokoensis was assembled from Illumina pair-end sequence reads. The whole plastome was 161,355 bp in length and presented a quadripartite structure consisting of two copies of inverted repeat (IR) regions (25,860) separated by a large single copy region (90,602 bp) and a small single copy region (19,033 bp). The plastome of Q. tarokoensis encoded a total of 134 genes, including 86 protein-coding genes (79 PCG species), 40 tRNA genes (33 tRNA species), and 8 rRNA genes (4 rRNA species). The overall GC content of Q. tarokoensis plastome is 36.8\%. A maximum likelihood phylogenetic analysis based on 33 complete plastomes revealed that Q. tarokoensis was collectively sister to a clade of (Quercus variabilis, (Quercus dolicholepis, Quercus baronii)) with high support.",

keywords = "Endemic species, Phylogenetic relationship, Plastid genome, Quercus tarokoensis",

author = "Yanci Yang and Tao Zhou and Juan Zhu and Jianhua Zhao and Guifang Zhao",

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year = "2018",

month = jun,

day = "1",

doi = "10.1007/s12686-017-0796-z",

language = "英语",

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T1 - Characterization of the complete plastid genome of Quercus tarokoensis

AU - Yang, Yanci

AU - Zhou, Tao

AU - Zhu, Juan

AU - Zhao, Jianhua

AU - Zhao, Guifang

PY - 2018/6/1

Y1 - 2018/6/1

N2 - Quercus tarokoensis is an endemic species to Taiwan, China. The complete plastid genome of Q. tarokoensis was assembled from Illumina pair-end sequence reads. The whole plastome was 161,355 bp in length and presented a quadripartite structure consisting of two copies of inverted repeat (IR) regions (25,860) separated by a large single copy region (90,602 bp) and a small single copy region (19,033 bp). The plastome of Q. tarokoensis encoded a total of 134 genes, including 86 protein-coding genes (79 PCG species), 40 tRNA genes (33 tRNA species), and 8 rRNA genes (4 rRNA species). The overall GC content of Q. tarokoensis plastome is 36.8%. A maximum likelihood phylogenetic analysis based on 33 complete plastomes revealed that Q. tarokoensis was collectively sister to a clade of (Quercus variabilis, (Quercus dolicholepis, Quercus baronii)) with high support.

AB - Quercus tarokoensis is an endemic species to Taiwan, China. The complete plastid genome of Q. tarokoensis was assembled from Illumina pair-end sequence reads. The whole plastome was 161,355 bp in length and presented a quadripartite structure consisting of two copies of inverted repeat (IR) regions (25,860) separated by a large single copy region (90,602 bp) and a small single copy region (19,033 bp). The plastome of Q. tarokoensis encoded a total of 134 genes, including 86 protein-coding genes (79 PCG species), 40 tRNA genes (33 tRNA species), and 8 rRNA genes (4 rRNA species). The overall GC content of Q. tarokoensis plastome is 36.8%. A maximum likelihood phylogenetic analysis based on 33 complete plastomes revealed that Q. tarokoensis was collectively sister to a clade of (Quercus variabilis, (Quercus dolicholepis, Quercus baronii)) with high support.

KW - Endemic species

KW - Phylogenetic relationship

KW - Plastid genome

KW - Quercus tarokoensis

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DO - 10.1007/s12686-017-0796-z

M3 - 文章

AN - SCOPUS:85048605883

SN - 1877-7252

VL - 10

SP - 191

EP - 193

JO - Conservation Genetics Resources

JF - Conservation Genetics Resources

IS - 2

ER -

Characterization of the complete plastid genome of Quercus tarokoensis

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Keywords

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