A Statistical Explainable Learning Model Optimizing Co-localization of Multidimensional Positivity Thresholds in Immunotherapy Decision-Supporting

  • Yixuan Wang
  • , Jingjing Liu
  • , Jian Zhao
  • , Jiayin Wang
  • , Quan Wang
  • , Xiaofeng Song

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

1 Scopus citations

Abstract

Tumor Mutation Burden (TMB) serves as a recognized stratified biomarker for immunotherapy. However, its one-dimensional representation of non-synonymous genetic alterations has been contentious. Specifically, the uniform quantification of mutations by TMB, coupled with measurement inaccuracies, complicates the accurate determination of a positive threshold for classifying patients. Parallel to this, assessing immunotherapy benefits requires the joint analysis of multiscale endpoints, namely discrete tumor response and sequential time-to-event, presenting a pressing challenge for clinical computation. Recognizing the intertwined nature of these challenges, we address the inter-sample bias inherent in multidimensional mutation biomarkers within the framework of multiscale endpoint fusion analysis, aiming for a more robust and comprehensive patient stratification. By combining the concept of corrected-score with a soft-threshold strategy, and utilizing the attention mechanism alongside the multiple instance learning, we propose a statistically explainable learning model optimizing co-localization of multidimensional positivity thresholds for immunotherapy categorical decision-supporting.

Original languageEnglish
Title of host publicationProceedings - 2023 2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023
EditorsXingpeng Jiang, Haiying Wang, Reda Alhajj, Xiaohua Hu, Felix Engel, Mufti Mahmud, Nadia Pisanti, Xuefeng Cui, Hong Song
PublisherInstitute of Electrical and Electronics Engineers Inc.
Pages4439-4443
Number of pages5
ISBN (Electronic)9798350337488
DOIs
StatePublished - 2023
Event2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023 - Istanbul, Turkey
Duration: 5 Dec 20238 Dec 2023

Publication series

NameProceedings - 2023 2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023

Conference

Conference2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023
Country/TerritoryTurkey
CityIstanbul
Period5/12/238/12/23

Keywords

  • Tumor mutation burden
  • attention mechanism
  • clinical decision-supporting
  • error control
  • multiple instance learning

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